rs254037306 SNP Detail

Summary

• ID
  rs254037306
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:120768224 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCACCCCAC CCCTACTAGC
  AGAGTGGGTG GGCCCCCGGG GACGCGCACC CACTGCTGTC TGTGCTCGCG CGCCGCCTCC
  AACTGCTCCA CCAGTTGCGT CCGTTGCTGG TTCAGATTCA GCATCTCATC CTGCTTCTCA
  CTCTGCAAAC TAAGCAGCTG CGCACGGGTC GACTCCATCT CCACCAGTCG TTTTTGTTCC
  K
  CCAGCTTCAG TGCTGCCTTT GTGCTTACCA GGGTCTCGAA GCGCGCCACC AGGTCAGAAA
  CCTCCTCAAA CTGAAGAGAG GAACTCACAT GGCCTGCAAT CCTCCTCCCC TGCCCACCTG
  GCTTGCCAAC ACACCCTGGG GGGGCTGTCC TCAGTCCAGG TGTGCCATGG GACATCTCAG
  GCCCTGAAAT GACCTTCCCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366479309	MGP_WTSI_5_121080168	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254037306					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366479309	MGP_WTSI_5_121080168	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:120768224 () rs orientation: forward

Symbol	Name	Function Class
Cfap73	cilia and flagella associated protein 73	within coordinates
Cpgi16507	CpG island 16507	33 bp distal
Cpgi16508	CpG island 16508	933 bp proximal
Ddx54	DEAD box helicase 54	1567 bp downstream
Gm72343	predicted gene, 72343	within coordinates
Rr108807	regulatory region 108807	424 bp distal
Rr108808	regulatory region 108808	1777 bp proximal
Rr126633	regulatory region 126633	1824 bp distal
Tssr1621	transcription start site region 1621	388 bp upstream
Tssr48527	transcription start site region 48527	103 bp downstream
Tssr48528	transcription start site region 48528	82 bp downstream
Tssr48529	transcription start site region 48529	70 bp downstream
Tssr48530	transcription start site region 48530	58 bp downstream
Tssr52948	transcription start site region 52948	171 bp upstream
Tssr52949	transcription start site region 52949	140 bp upstream