rs254039158 SNP Detail

Summary

• ID
  rs254039158
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:12305730 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGATGCATC CAAACACTCA
  GATTTACATT AGGAGGGGGG GAAAGAACAC TAAATTGCCG CGAGGAATGG CTCTGGTTCT
  TTTCAACCAG GGGCCACACT ACAGGTTAGC ATCACTTACT GGTGGTGTCA AACGGTATCT
  GCTTGCACTG TGCAGACCTC TCTGAGGGCC AGGGACAGTA GTAGACAGCT CCCCCTTCTA
  Y
  GATATCCGGC TGGCTAGTGT TGGCTTTGGG TGCCCCCACT AAGACACTGG CTCTGCAAAG
  AGATTGGAGA AAGTCACTCC TCTGGGAACA TTTACCCGTG TGCCCAGTCT GTAGAAGCAT
  GCCCACCGGA CTGCGGCAGC AGCGGCAGGC ACAAACAGGT TTATTGTGGA AAGACTGCCA
  AACTTGATTT CCTCTTTGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353116106	MGP_WTSI_2_12222546	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254039158					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353116106	MGP_WTSI_2_12222546	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:12305730 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11209	CpG island 11209	510 bp proximal
E030013I19Rik	RIKEN cDNA E030013I19 gene	327 bp upstream
Itga8	integrin alpha 8	within coordinates
Rr551891	regulatory region 551891	within coordinates
Rr551892	regulatory region 551892	993 bp proximal
Rr551893	regulatory region 551893	1087 bp proximal
Tssr16173	transcription start site region 16173	232 bp downstream
Tssr16174	transcription start site region 16174	85 bp downstream
Tssr16175	transcription start site region 16175	100 bp upstream
Tssr16176	transcription start site region 16176	289 bp upstream
Tssr16177	transcription start site region 16177	310 bp upstream
Tssr16178	transcription start site region 16178	336 bp upstream
Tssr16179	transcription start site region 16179	384 bp upstream
Tssr22663	transcription start site region 22663	131 bp downstream
Tssr22664	transcription start site region 22664	975 bp downstream
Tssr22665	transcription start site region 22665	995 bp downstream
Tssr22666	transcription start site region 22666	1015 bp downstream
Tssr22667	transcription start site region 22667	1069 bp downstream
Tssr22668	transcription start site region 22668	1077 bp downstream