rs254039813 SNP Detail

Summary

• ID
  rs254039813
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135673733 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ttcagggag agacctgtcc ccaaaaataa
  ggaggagagg agttaagaag acacctaatg ttgacctctg gtcttcatat gtatgaacgc
  acacatacaT GTTCACCTTA ATtgcacaca cacatgcaca tacacatgca cacacacaca
  S
  agagagagag agagagagag agaggagaga gagaTCAAAC AAAAGCAAAT AAAAAAAGAA
  GAAATAAAAT AAGACTACAT GAAAGGAGGC CACAGAGTAG GTCTCTCTGA GGGGCTGCTG
  GGACAGCTAA GTACCTatag ttttacaagt                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319992924	CHEV_1_137642572	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254039813					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135673733 () rs orientation: forward

Symbol	Name	Function Class
Csrp1	cysteine and glycine-rich protein 1	within coordinates
Rr419261	regulatory region 419261	1709 bp distal
Rr419262	regulatory region 419262	228 bp proximal
Rr419263	regulatory region 419263	1664 bp proximal
Tssr222	transcription start site region 222	775 bp upstream