rs254041356 SNP Detail

Summary

• ID
  rs254041356
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93019964 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACCC AGAAGGCTGA GGCAGGAAGA
  S
  TCTGAATTAC AGACCAGTTT GGACT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320395093	CHEV_2_93029776	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254041356					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93019964 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
C230071H18Rik	RIKEN cDNA C230071H18 gene			1288 bp upstream
Cpgi11943	CpG island 11943			625 bp distal
Rr561111	regulatory region 561111			within coordinates
Rr561112	regulatory region 561112			632 bp distal
Rr561113	regulatory region 561113			416 bp distal
Trp53i11	transformation related protein 53 inducible protein 11			Intron
				Noncoding-Transcript-Variant
Tssr18981	transcription start site region 18981			1978 bp downstream
Tssr18982	transcription start site region 18982			1836 bp downstream
Tssr18983	transcription start site region 18983			1492 bp upstream