rs254042639 SNP Detail

Summary

• ID
  rs254042639
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:141154418 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGCTGTTA ACCAAGTAGT
  ATTTGTTCCA GCTACTCAGG CACATTCTTG AGAATAGAAG ATAGCTACTG TCTAAGACTG
  CCGTGGATTC TAGCTTGTTT CTAATCTCCT TAGTTCTCTT TCTTTACTTT TCCATCCATG
  AAACACATGA TCTGGAAGGA CCCACATAGA CTGCCTCAAA GCAGGTTGTA AATAAGTCTT
  Y
  TCTGTAGTGT ATGTAGTTTA GCCAATCATG GCAACTGTGT TCAATATGCA AAACCCACCT
  GATTAAAACA CTGGCCAAAC AAACAAAAAT GAAATACTTA TCCTTTCCTT TCAAGGACAA
  AATTACAGGG ATTCCATGAA ATTACCTCCT CCTGGGGTGT AAATGTCAAC TACCCTGTCC
  AGAGATCTAA GGAACTTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320992229	CHEV_3_141111621	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254042639					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141154418 () rs orientation: forward

Symbol	Name	Function Class
Gm66152	predicted gene, 66152	within coordinates
Tssr32030	transcription start site region 32030	538 bp upstream