rs254044355 SNP Detail

Summary

• ID
  rs254044355
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:96142541 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTCTAAGG AACTCAGTGT
  GGGGAGGGAG GGGGAGTTGG AGAGGGGCAG AGCCTTCCTT TCAGTGAGGA AAGCCCTGAT
  GAGGAAAATG AAGCAACAGA TGTTTCTTCT GTTACAATTG AAGTTGTTTC ATTCAAAATT
  CAACAGTAGC TGAAATGAGG AGAGAGAGGG GGGTCATAAA TCCGACCTAA ATGGTGAATA
  M
  ATAAAACAGC CATTTATCAT TTATTTAAAA TTCATCCTTT ATAGTCAGGA TTTGAGAATC
  AACATAACAA AAATGAGTAT ACATTTTTGT TAAAGAGTTT TTTAAAAGGA AACCTTAAAA
  GTTGTGTAAT GAAAACAGTT TTAGTGCATT TAAGTTATAG GAAATAGAAC ATTATGTTAG
  ATTTAACTCT TAAAACCAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323107370	CHEV_9_96160907	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254044355					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96142541 () rs orientation: forward

Symbol	Name	Function Class
Tfdp2	transcription factor Dp 2	within coordinates
Tssr2975	transcription start site region 2975	1254 bp downstream
Tssr86589	transcription start site region 86589	1777 bp downstream
Tssr86590	transcription start site region 86590	1762 bp downstream
Tssr86591	transcription start site region 86591	1703 bp downstream
Tssr86592	transcription start site region 86592	1686 bp downstream
Tssr86593	transcription start site region 86593	1658 bp downstream
Tssr86594	transcription start site region 86594	1475 bp downstream
Tssr86595	transcription start site region 86595	1227 bp downstream
Tssr86596	transcription start site region 86596	1211 bp downstream