rs254045425 SNP Detail

Summary

• ID
  rs254045425
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171285639 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTAATCA CATCCCCAGA
  AAGAGTTTCT AATTTAATGA GGGTTATTTG ATTTAATTAC TAGATCTGTT GTTATACTTG
  AGTATGAGTT CAATATTAAA ATTATCATGA AAAATATGCA ACGTTATAGT ATTAGAAGTA
  ATTTATAGAA TCAGTGAGTT TTGACTTTCT AAGAGTAACA TCTGAGCATG ACAGTGGCGG
  Y
  GCACACATTT AAATTGGACA CATGGGAGGC AGAGGGGGGT GGGTTTCTGC ATCCGGGGCC
  AGCCTAGTCT ACAGAGCGAG TTTCAGGGCA GCCTCAGCTA AACAGAGCAA CCCTGACTCG
  AAAAAACATA ACACAGTACA ACACAACAAA CAAAGAAACA AAAAGAGTGC TGTCTGAGGG
  TCCAGAGAGA TGGCTCAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320119032	CHEV_1_173388202	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254045425					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171285639 () rs orientation: forward

Symbol	Name	Function Class
F11r	F11 receptor	within coordinates
Rr25638	regulatory region 25638	123 bp distal
Rr31965	regulatory region 31965	1563 bp proximal
Tssr10057	transcription start site region 10057	34 bp upstream
Tssr10058	transcription start site region 10058	262 bp upstream