rs254045658 SNP Detail

Summary

• ID
  rs254045658
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:114634556 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCACTATGC CTGCATGGAT
  GCTGTCATGC TCTCTTGCTT TGATGACACA GGATTGAAAT TTTATACTTG TAAATCAGCC
  CCAATTAAAT GTTTTCCTTC ATAATCTTTC ATCTGTCATG GTCTCTGTTC ACAGCAGTAA
  AACCCTAACT ATGACATATG TAAGCCTATT AGGTGTAAAT TCAAGAGCGC AGTATGTTTT
  M
  CTGGACAGCA CTCTTATTTC TAACCTTTAA CTCAGAGTTT TCCATTCCAT CACTTCTAAA
  ATCATACTCA CTGCACCAAC AGAGGACTGT TAGACTTGGC AATGGCAGAA ATGATGCAAC
  AATGCATTCT GATATCAATA CCTCTTATAT TCTAAGAGCC TATAACTTCT GGTTGACCAC
  AAAAACAAGT TATCAAAACA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss387442802	MGP_WTSI_12_115909147	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	A	C	C	C	C	C	C	C	C	C	C	C	A	A	A	A	A	A	C	C	C	C	C	C	A	C	C	C	A	C	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs254045658					SNP	C	C	A	C	C	C	C	C	C	C	C	C	C	C	A	A	A	A	A	A	C	C	C	C	C	C	A	C	C	C	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387442802	MGP_WTSI_12_115909147	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:114634556 () rs orientation: forward

Symbol	Name	Function Class
Gm46322	predicted gene, 46322	287 bp upstream
Igh	immunoglobulin heavy chain complex	within coordinates
Ighv1-17-1	immunoglobulin heavy variable V1-17-1	1032 bp downstream