rs254056817 SNP Detail

Summary

• ID
  rs254056817
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:82424767 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGCCCAGC CCGGAGCTCG
  CACTGGCGAT CGGAGAGGGG CGCCGGGGTC CCCAGGGTCC CCCGAGCCTC GCCGCAGCGG
  CCCGCCCTCC CCCGGCGCCC GGTGCACGTG GCCGCGCTCG GAGCGGGAAG GCCGCGCCAC
  CGCTCGCCCC TCCTCTCCTC CTCCTCCTGC CGCGCTGGCC GCGTCCCAAT CCCCACCCCC
  R
  GAGCCCGGGG CGCCGGCGGA AAGCGGCTCC CTTCCCGCGG GGGTGCGGGC AGGGCGGGGC
  CGCGGCGCGC CCGAGGCTGC GGGGCGGGAG CGCGCGGGGT GCGTGTGCGG CTGCGGGTCT
  CCCCGGCGGC TCCCGCCGGC TCCCCGCCCC GCCCCCCGCC GAGTGAATGA ACTTGATTCC
  CGGGACCCTG GAGGCGACCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362190675	MGP_WTSI_4_82152434	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254056817					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362190675	MGP_WTSI_4_82152434	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:82424767 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14398	CpG island 14398	within coordinates
Gm11266	predicted gene 11266	1459 bp upstream
Gm57123	predicted gene, 57123	659 bp upstream
Nfib	nuclear factor I/B	within coordinates
Rr376744	regulatory region 376744	1183 bp upstream
Tssr37680	transcription start site region 37680	576 bp downstream
Tssr37681	transcription start site region 37681	1416 bp upstream
Tssr37682	transcription start site region 37682	1476 bp upstream
Tssr42247	transcription start site region 42247	1632 bp upstream
Tssr42248	transcription start site region 42248	1301 bp upstream
Tssr42249	transcription start site region 42249	1275 bp upstream
Tssr42250	transcription start site region 42250	1172 bp upstream
Tssr42251	transcription start site region 42251	1144 bp upstream
Tssr42252	transcription start site region 42252	929 bp upstream
Tssr42253	transcription start site region 42253	840 bp upstream
Tssr42254	transcription start site region 42254	791 bp upstream
Tssr42255	transcription start site region 42255	728 bp upstream
Tssr42256	transcription start site region 42256	724 bp upstream
Tssr42257	transcription start site region 42257	692 bp upstream
Tssr42258	transcription start site region 42258	663 bp upstream
Tssr42259	transcription start site region 42259	56 bp upstream