rs254059578 SNP Detail

Summary

• ID
  rs254059578
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:128515943 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATAATGCTT GTGCACATAT GTGAGCCCAC
  ACAGACACAC CCAGGAGGGT CTCCGGGAAG CCATAAATGT GTGCATTATT CTACTTTCCC
  AAACATGTTA TTACTAAGAG CCAGCAGAAA TGATGACATA GCACACAGCC AAGTTAAGTT
  Y
  ATCATTGACT TTTATTAACA ATGTAATACA AGACTGTACA TTTGTAGGGA GTGAAATCAA
  TCTACTCTTG AAAACTGAAA AAACAAACAA ACAAAAAAAC CCCCAGCATT TCTACCACCA
  TTTCAGGCTT TGGTTTTAAG TGCCATCTTT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319965147	CHEV_1_130484783	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254059578					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:128515943 () rs orientation: forward

Symbol	Name	Function Class
Cxcr4	C-X-C motif chemokine receptor 4	within coordinates
Rr12058	regulatory region 12058	343 bp distal
Rr28453	regulatory region 28453	657 bp proximal
Tssr195	transcription start site region 195	1265 bp upstream
Tssr13461	transcription start site region 13461	212 bp downstream
Tssr13462	transcription start site region 13462	398 bp downstream
Tssr13463	transcription start site region 13463	494 bp downstream
Tssr13464	transcription start site region 13464	551 bp downstream
Tssr13465	transcription start site region 13465	569 bp downstream
Tssr13466	transcription start site region 13466	634 bp downstream
Tssr13467	transcription start site region 13467	681 bp downstream
Tssr13468	transcription start site region 13468	770 bp downstream
Tssr13469	transcription start site region 13469	823 bp downstream
Tssr13470	transcription start site region 13470	918 bp downstream
Tssr13471	transcription start site region 13471	987 bp downstream
Tssr13472	transcription start site region 13472	1056 bp downstream
Tssr13473	transcription start site region 13473	1069 bp downstream
Tssr13474	transcription start site region 13474	1125 bp downstream
Tssr13475	transcription start site region 13475	1149 bp downstream
Tssr13476	transcription start site region 13476	1166 bp downstream
Tssr13477	transcription start site region 13477	1227 bp downstream