rs254063398 SNP Detail

Summary

• ID
  rs254063398
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:74268899 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAT AGCATTTGAA ATGTGAATGA
  Y
  GAAAATATCT AATAAAAAAT TTAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324434589	CHEV_13_74258228	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254063398					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:74268899 () rs orientation: forward

Symbol	Name	Function Class
0610040A22Rik	RIKEN cDNA 0610040A22 gene	47 bp downstream
Cpgi5859	CpG island 5859	236 bp proximal
Gm41003	predicted gene, 41003	1321 bp upstream
Rr281645	regulatory region 281645	102 bp proximal
Slc9a3	solute carrier family 9 (sodium/hydrogen exchanger), member 3	677 bp upstream
Tssr120348	transcription start site region 120348	625 bp upstream
Tssr120349	transcription start site region 120349	655 bp upstream
Tssr120350	transcription start site region 120350	1738 bp upstream