rs254068228 SNP Detail

Summary

• ID
  rs254068228
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24598070 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGGCCATG AGTCACCAAC
  TGCCCTACTG AAGCCCATGC CTGAGATATT GACTTATGGA GCAGGTGTCA GGGCCTCCAG
  CGATCAAGCC AGTATCTCAG AGGCGGAGAG GAAAACTGTG CTTCCTAGAG CATTTCCTGG
  AGGAGCGTGG AGGACATCCA TGGAACATCC CACAGGTTTA TCCCAGACTG CCTGATTTTC
  K
  TATATAACAA GAGTTCATGA CTCCCATACT TTTGTGTCTA GGTAAGGTGC AAAGCTATGC
  TTTGTGGCAA AATGGAATCC CAAGGAAGTG GGCGTGGGGG GGTACCCCGG TGGCAGGAAA
  TTCCCATGAT CTTTCTGAGA CCTCTAGAGA GAGAGAGGTT AAGTGTGGCT TTAGCTGGTA
  CCTCCCTCTG ACATTACTCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss364288763	MGP_WTSI_5_23898890	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254068228					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364288763	MGP_WTSI_5_23898890	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24598070 () rs orientation: forward

Symbol	Name	Function Class
Abcb8	ATP-binding cassette, sub-family B member 8	591 bp upstream
Atg9b	autophagy related 9B	929 bp upstream
Cpgi15597	CpG island 15597	1164 bp proximal
Rr112283	regulatory region 112283	within coordinates
Rr124925	regulatory region 124925	730 bp proximal
Rr398998	regulatory region 398998	336 bp upstream
Rr398999	regulatory region 398999	1097 bp upstream
Tssr45411	transcription start site region 45411	568 bp upstream
Tssr45412	transcription start site region 45412	1316 bp upstream
Tssr50315	transcription start site region 50315	1111 bp upstream
Tssr50316	transcription start site region 50316	1065 bp upstream
Tssr50317	transcription start site region 50317	1041 bp upstream
Tssr50318	transcription start site region 50318	578 bp upstream
Tssr50319	transcription start site region 50319	374 bp upstream