rs254081787 SNP Detail

Summary

• ID
  rs254081787
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:118085640 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCCACCC CAGCCCTCCA
  CCCCTCCAAA AGTTGCCCCA ACTGTTTTTT GGGGTTTGTT TGGGGTTTTT TTTTTGCCCC
  AAATGTTTTA GCTGGGATTT TAATTGGAGA GCCAGGCTTG CATGGAAACC CTACCAGCCT
  ACCAGGAACT GGGATAAATG TTATCTGTGG CTGTATTTTG TTTTTTTTGT TTGTTTGTTT
  G
  TTTTTTTCTG CTGTTATTCC TATAACAAAG CTTAACTCTG AGAGATAAAG TAGAAATGAA
  CTAACACCCC CCCCCACACT TATATATATT TAACCACTGT CTCTATGGCA AAGAATATAA
  GCCTATACAT ACCTGGGAGA AGGCTAACTG TGTAAGGCAA GGGGTCGCAA ACTGCTGGCC
  TCAGGTTCAA CCAGATATCT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	QSi3/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
ss372890942	MGP_WTSI_7_125629931	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	QSi3/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
rs254081787					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372890942	MGP_WTSI_7_125629931	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:118085640 () rs orientation: forward

Symbol	Name	Function Class
Itpripl2	inositol 1,4,5-triphosphate receptor interacting protein-like 2	within coordinates
Rr381380	regulatory region 381380	within coordinates
Rr654485	regulatory region 654485	1908 bp proximal
Tssr74438	transcription start site region 74438	760 bp upstream
Tssr74439	transcription start site region 74439	1119 bp downstream
Tssr74440	transcription start site region 74440	1836 bp downstream