rs254088376 SNP Detail

Summary

• ID
  rs254088376
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:98659372 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGAATTCTC CATTCCCGAG CGGTCTGTGG
  GGAAGACGAC AGCAGTGAGG CGAGCTCCCT GAGCTCCTCC TCTGACACGG AGGACACGGA
  GGTCTGCGAG GACCAGGCAG GCAAGGCAGC CTCTCCCTGA GGCCCCTCGG AGGGCAACGG
  R
  AAAGGAGAAG GAGGGCGCTA CTCCTTCTCC CTGGGGGGCC TCTGCCCTAG AGCGGGGCCA
  CGCCCACACG CTGGGAGCAT GGCCACAGGC TGGCCACCTC CCACTCCTCG AGCCCACCCT
  CCTACCCTGA GCATGCCACT CGTGGCCAAG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323827336	CHEV_11_98629860	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254088376					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:98659372 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi3768	CpG island 3768			within coordinates
Gm57390	predicted gene, 57390			799 bp downstream
Nr1d1	nuclear receptor subfamily 1, group D, member 1			Intron
				Noncoding-Transcript-Variant
Thra	thyroid hormone receptor alpha			mRNA-UTR
Tssr110587	transcription start site region 110587			309 bp upstream
Tssr110588	transcription start site region 110588			1771 bp downstream