rs254089152 SNP Detail

Summary

• ID
  rs254089152
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:53873676 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATCAGAGC CAGGGACAAT
  AGTTTTGATT TTGAAGTTTA AGTCAAAATC GGAATCACTT TCCTGGACGC TGTCTTTCTG
  GTTAACTTGA AAACAATAGA CACACTAGCA GCTGAAAGTA GCCAACCTCG AGTGAACCCC
  GTAGGCGGAC TAATTTCAAA CTTTTTCCAT GCGTTTAGTT TTCATTTCGC CGACATGTAA
  W
  GTTCTCAAAC GAACAAGTAT TATGTGATAC ACACACACAC ACACACACAC ACACACACAC
  ACACACCACA CACACACACC ATTGAGTCAT CTCCCTCCCT CTCTGGTCAT ATTCGGTTCA
  GAAACTACCA GGAGAAGACG ATGGGGAAGA ATTGTTTAAA AAAAAAAAGT TTAACTCAAA
  GTCAAAAAAA AAAAAAAAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398495045	MGP_WTSI_17_53705973	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254089152					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398495045	MGP_WTSI_17_53705973	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:53873676 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9316	CpG island 9316	94 bp proximal
Kat2b	K(lysine) acetyltransferase 2B	213 bp upstream
Rr339992	regulatory region 339992	within coordinates
Tssr5169	transcription start site region 5169	746 bp downstream
Tssr145221	transcription start site region 145221	88 bp upstream
Tssr145222	transcription start site region 145222	328 bp upstream
Tssr145223	transcription start site region 145223	611 bp upstream
Tssr145224	transcription start site region 145224	640 bp upstream
Tssr145225	transcription start site region 145225	666 bp upstream
Tssr145226	transcription start site region 145226	1790 bp upstream
Tssr148709	transcription start site region 148709	1670 bp downstream
Tssr148710	transcription start site region 148710	1688 bp downstream