rs254095606 SNP Detail

Summary

• ID
  rs254095606
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:105280115 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAACACAGG GCTGATTACC
  GGTGGCACAT CAAAAGATAA TAGAGAAAAA TCTATAAAAT AAAGTTAACA GAAAGCCTGA
  AACACTGAGA AGAAAAATTG GCTTTCTACT CATTAATATG GATAACAGCA TTGTTAGCTA
  TGGAAGAAAA AGTATGAGAA ACAAAATCAA AATTAGACAA GTAGGACAGA ACCTGACTAA
  Y
  ACGTTTCTCT CCAGAAAACA AAATATCCAA TCAAAAATAC AAAACAGAAC AGGAGAGTAA
  TGTTTCAAAC CAAATGTCTT CCAGGGGACA TTTAAAACAT AAAGCTAGCA TGCAACCCAA
  CAACACCACC AATCCAATAA GCCCAGCAAA TATGAGGAAG AACTTGAACA TATGTTTCTG
  AAATGAAAGC ACACAGTGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366134842	MGP_WTSI_5_105561268	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254095606					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366134842	MGP_WTSI_5_105561268	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:105280115 () rs orientation: forward

Symbol	Name	Function Class
Gbp4	guanylate binding protein 4	within coordinates
Tssr1571	transcription start site region 1571	463 bp upstream
Tssr52267	transcription start site region 52267	917 bp upstream
Tssr52268	transcription start site region 52268	863 bp upstream
Tssr52269	transcription start site region 52269	788 bp upstream
Tssr52270	transcription start site region 52270	626 bp upstream
Tssr52271	transcription start site region 52271	508 bp upstream
Tssr52272	transcription start site region 52272	445 bp upstream
Tssr52273	transcription start site region 52273	367 bp upstream
Tssr52274	transcription start site region 52274	336 bp upstream
Tssr52275	transcription start site region 52275	311 bp upstream
Tssr52276	transcription start site region 52276	277 bp upstream
Tssr52277	transcription start site region 52277	261 bp upstream
Tssr52278	transcription start site region 52278	234 bp upstream
Tssr52279	transcription start site region 52279	172 bp upstream
Tssr52280	transcription start site region 52280	121 bp upstream
Tssr52281	transcription start site region 52281	90 bp upstream
Tssr52282	transcription start site region 52282	73 bp upstream
Tssr52283	transcription start site region 52283	within coordinates
Tssr52284	transcription start site region 52284	59 bp downstream
Tssr52285	transcription start site region 52285	93 bp downstream
Tssr52286	transcription start site region 52286	106 bp downstream
Tssr52287	transcription start site region 52287	135 bp downstream
Tssr52288	transcription start site region 52288	152 bp downstream
Tssr52289	transcription start site region 52289	232 bp downstream
Tssr52290	transcription start site region 52290	339 bp downstream
Tssr52291	transcription start site region 52291	679 bp downstream
Tssr52292	transcription start site region 52292	1158 bp downstream
Tssr52293	transcription start site region 52293	1328 bp downstream
Tssr52294	transcription start site region 52294	1425 bp downstream
Tssr52295	transcription start site region 52295	1743 bp downstream