rs254099423 SNP Detail

Summary

• ID
  rs254099423
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:35026605 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAAATGCT GGCATAACAT
  TTCCAGAGTG CTGGGATTAT AAATAGGTAC CACCACAATA TGTTTAGGCA ATGTTAAGAG
  ATCAAGTTTA AAGAGTTTAT GACAGGTAAA CACTTTACCA ACTGCATTCC TTGTGTCGTT
  GTCCGTCCTC CCCCCCCCCC GCCGCCCCCC CCCCCAGTAC TGGGATTGTA GGCAGCTCCG
  K
  CTGTCACTGA ACCACACCCC CAGTCCCTAA TTTACTTTTA TGACTTCTGC CTGCATACCT
  CTCTTTATCT CCATCATCAC CTTGAAATCT TTGGGGACTG GCCCAACTCC TGGCTTGCTG
  TAGTGGGGCT GGGGGATCGG ATGTGTTGAG GAGGGTGAAA TGAGTGGGAG GTGAGGCCCA
  GGGTTCAGTA AGCAGCCAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377194193	MGP_WTSI_9_34922894	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T	G	T	T	G	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254099423					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T	G	T	T	G	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377194193	MGP_WTSI_9_34922894	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:35026605 () rs orientation: forward

Symbol	Name	Function Class
4930581F22Rik	RIKEN cDNA 4930581F22 gene	1419 bp upstream
Cpgi21550	CpG island 21550	944 bp proximal
Gm57537	predicted gene, 57537	1891 bp downstream
Rr676432	regulatory region 676432	929 bp proximal
Rr676433	regulatory region 676433	1440 bp proximal
Rr676434	regulatory region 676434	1554 bp proximal
Rr676435	regulatory region 676435	1736 bp proximal
St3gal4	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	within coordinates
Tssr84325	transcription start site region 84325	1431 bp upstream
Tssr84326	transcription start site region 84326	1621 bp upstream
Tssr88717	transcription start site region 88717	1451 bp downstream
Tssr88718	transcription start site region 88718	1495 bp downstream
Tssr88719	transcription start site region 88719	1666 bp downstream