rs254102633 SNP Detail

Summary

• ID
  rs254102633
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84510528 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGTCCCTT GAGTCAGAGC
  TCTTTAAGGC GCACTTCCTT TACATGGGTC AAACTGAAGC CACCGGTTTG TGAGTCCCCA
  AAGGAATCAC TGGAGGACAA CAGGAGCATT TTCAGATACC TTTCAGGGCA GACCTGCCCT
  GGCTGTACCC CCTATCTTGA AGAAAAAGAA AAACGAATAA GGTGAAAATC GCAACTACTA
  W
  TTATAGAATC AAAATGGGTT CATCCATTGA GTTTTAACTT TCAAAAATCA TAAAGTACCA
  TCCTAAATAT CTGAGATTTC TTGAATTGCC TAGTGACCTG TGGGATGTAC GTCAGAATAT
  TACCCAGAAC TGAAGTTGTG TCCTTTGAAC TTCAGCATTG TAGAACTATG AACCGTGGCT
  GTGTTAAAAA TGATACATGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397139499	MGP_WTSI_16_84713885	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T	T	T	A	A	A	T	T	T	A	A	T	T	T	T	T	T	A	T	A	T	A	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254102633					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T	T	T	A	A	A	T	T	T	A	A	T	T	T	T	T	T	A	T	A	T	A	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397139499	MGP_WTSI_16_84713885	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84510528 () rs orientation: forward

Symbol	Name	Function Class
Mir155	microRNA 155	500 bp upstream
Mir155hg	Mir155 host gene (non-protein coding)	within coordinates
Rr404941	regulatory region 404941	305 bp downstream
Rr518521	regulatory region 518521	within coordinates
Rr518522	regulatory region 518522	109 bp proximal
Tssr139172	transcription start site region 139172	1780 bp downstream
Tssr139173	transcription start site region 139173	562 bp upstream
Tssr139174	transcription start site region 139174	1345 bp upstream
Tssr139175	transcription start site region 139175	1433 bp upstream
Tssr139176	transcription start site region 139176	1969 bp upstream