rs254106802 SNP Detail

Summary

• ID
  rs254106802
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24632044 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTCCTACT GAGTGAGTGG
  AGCTGGGTTC CTGTTCTGCA CTGGGGAGGC TGTTTCTGTC TTATGTCTAG GGTGGTAGTC
  CTGCTGGCCT GCCTGCCTTT GGGGAGCACC CCCTCCGTAC TTGCAGGCCC TCTGCTCTCC
  CTTTTGGGTT CTCTCCAAAG TTCTTTCTAG TCCTCCTTTC TGTTTGGGAA GCCAGCGCCC
  W
  GGCCTCCACA CCCCTCTTGC TCTGTGGGGT GTCTCACTCC CTACCACACC CCTTTCTGCT
  CTCAGGCTCA CCTCCAGGGG CCCTGGTTCC TGTTCCTGCC TGGCCCTTCA CTCTCAATCT
  TTCTGTCCCT TATCATTCCC TCCCTCATCT CCTACTTTCT TTCCAGGGCT GGGCCTTGAC
  TCCTTCCTGC CTCCCGGTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321495735	CHEV_5_23932864	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254106802					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24632044 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15600	CpG island 15600	1181 bp distal
Rr124927	regulatory region 124927	within coordinates
Slc4a2	solute carrier family 4 (anion exchanger), member 2	within coordinates
Tssr45418	transcription start site region 45418	1755 bp downstream
Tssr45419	transcription start site region 45419	179 bp downstream
Tssr45420	transcription start site region 45420	461 bp upstream
Tssr45421	transcription start site region 45421	1165 bp upstream
Tssr45422	transcription start site region 45422	1202 bp upstream
Tssr45423	transcription start site region 45423	1714 bp upstream