rs254107000 SNP Detail

Summary

• ID
  rs254107000
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128580332 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGCTCTA CTTCTATCTT
  TCTTTTCTAA TTAGTCAAAG CCTCTCCCAT CATCCCTTCC CAGGAAAGCC AAGGTAGGGG
  TCAGGGTGCT GATTGGAACC ACCCAGCGAC TGGTCAGCAA TTGGCCGGCC CTCCAATCTC
  CAAATCATCA CTTTGGACGC GCCTGCCCAA GTCAATGATT CCACATTCAG GAGAACCCAG
  M
  GAGGCAAGGC CAGAGTTCCA CAATTCACAC ACAACCCTAG ACCTAGGTGC ATTTCCTTCT
  CCACATGGCT TCACATTGCT TGACCCTGCC TGAGATAATT GCCCACCTCT CCTCCGAGTT
  CCTCAGCTCC GCCTCGGACT TGTCTATGCA CAGCCTTTTC TCTCAAAATC CATATCCTTT
  CCTTAAGACT AGGGTGGAGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382210050	MGP_WTSI_10_128181519	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254107000					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382210050	MGP_WTSI_10_128181519	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128580332 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2418	CpG island 2418	240 bp distal
Dgka	diacylglycerol kinase, alpha	within coordinates
Gm31504	predicted gene, 31504	484 bp upstream
Gm66065	predicted gene, 66065	1506 bp downstream
Rr224483	regulatory region 224483	within coordinates
Rr385480	regulatory region 385480	908 bp downstream
Rr402364	regulatory region 402364	186 bp upstream
Tssr96440	transcription start site region 96440	330 bp upstream
Tssr96441	transcription start site region 96441	474 bp upstream
Tssr96442	transcription start site region 96442	730 bp upstream
Tssr96443	transcription start site region 96443	1994 bp upstream
Tssr99940	transcription start site region 99940	1744 bp upstream
Tssr99941	transcription start site region 99941	618 bp upstream
Tssr99942	transcription start site region 99942	553 bp upstream
Tssr99943	transcription start site region 99943	491 bp upstream
Tssr99944	transcription start site region 99944	468 bp upstream
Tssr99945	transcription start site region 99945	378 bp upstream
Tssr99946	transcription start site region 99946	354 bp upstream
Tssr99947	transcription start site region 99947	211 bp upstream
Tssr99948	transcription start site region 99948	181 bp upstream
Tssr99949	transcription start site region 99949	383 bp downstream
Tssr99950	transcription start site region 99950	583 bp downstream
Tssr99951	transcription start site region 99951	606 bp downstream
Tssr99952	transcription start site region 99952	619 bp downstream
Tssr99953	transcription start site region 99953	624 bp downstream
Tssr99954	transcription start site region 99954	982 bp downstream
Tssr99955	transcription start site region 99955	1015 bp downstream
Tssr99956	transcription start site region 99956	1770 bp downstream
Tssr99957	transcription start site region 99957	1837 bp downstream