rs254112226 SNP Detail

Summary

• ID
  rs254112226
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:140508208 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCAGTGGC TGTGGAGAGC
  CACATGGCTC CCGGACAGGA CGACCCGGTC CCAATGAGTG CGGTCCGGGT TCCCGAGGAA
  AGGAGCGGGG TGGTCGCCAC TGCTGCTAGA GCTGCGGAGG CTGCTGCTGC TGCTGAGGCT
  CTCAGTCTCC TAAGCGCTTG GTGGCCAGAG AAGGAGCAAC TCGCCATGGT GATGCACCGT
  K
  GTTTTAAGGT GAGCGGAGGG GAGGGGGGGC TCGAGAAGGG AGGGCTTTGG GGGGAGAAGA
  GGCAGTCTCC CCCTGTCTGC CCGCCCCAGA CCCCTCCCGC CTAGGCCCGC GTCCCCGCCC
  ACTTCACTGG GCTCAAGGCA GTGGGCAAAA CAACACGTGA CCGTCGCCTC ACGCGGCAGC
  TCGCACCACA GGCAGCTACC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325981675	CHEV_X_138159755	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254112226					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:140508208 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22975	CpG island 22975	71 bp distal
Gm15295	predicted gene 15295	within coordinates
Irs4	insulin receptor substrate 4	within coordinates
Rr3101	regulatory region 3101	1008 bp distal
Rr8326	regulatory region 8326	within coordinates
Tssr164271	transcription start site region 164271	17 bp upstream