rs254115590 SNP Detail

Summary

• ID
  rs254115590
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:58279054 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTTCGGAA GAGCAGTCGG
  GTGCTCTTAC CCACTGAGCC ATCTCACCAG CCCTAAACCT ATTTTTAAGA GCTATTTTAG
  GACTACACTA AAGCTGGGTT AAAGGCACAG ACATCTCCCA TGTACCTTTG CTGCCTGGCT
  CACGTGTAAT TGCTATCATT GTCAAAGCTC TCACCACAGT GGTGAGCCTA CACAGGTGCT
  Y
  ACTGTTACCT AAGTCCCCAG TTTACCTCAG GGTCACTCCT GATGTAGTGC ATTCCACCAT
  GACAGTGTAA CATAGAGGAC AGTCTTGTCC TGAAAGACGT CTGTGAGCAC CTGCTCAGGC
  TTTGCTTGTG CCCAACTCTC TGGCAGCCAC TGGTCTCTCT TTTTTTTTTT TTAACTGCCT
  CTATAAACTT TCATATCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323690070	CHEV_11_58201730	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254115590					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58279054 () rs orientation: forward

Symbol	Name	Function Class
Lypd8	LY6/PLAUR domain containing 8	within coordinates
Tssr101739	transcription start site region 101739	1467 bp downstream
Tssr101740	transcription start site region 101740	1422 bp downstream
Tssr101741	transcription start site region 101741	1404 bp downstream
Tssr101742	transcription start site region 101742	1860 bp upstream
Tssr101743	transcription start site region 101743	1929 bp upstream
Tssr108157	transcription start site region 108157	1424 bp upstream
Tssr108158	transcription start site region 108158	1392 bp upstream
Tssr108159	transcription start site region 108159	1923 bp downstream
Tssr108160	transcription start site region 108160	1936 bp downstream