rs254117200 SNP Detail

Summary

• ID
  rs254117200
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129272475 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAATATTTA TGGCACACAA
  ATATCAGGTG ATACATTTCC TAAAATAGTA AACCGCTGAA TTTTCATACT GCTTAAATTC
  CACAAACTAA ATTAGTTTTC TACTTCTTCA CGCTGATTGT CAAGTAATGC GGAATGGGGG
  AGAAGATTCA AAGTCTCAAA GCATGCGTTT AATATTTTGA GGCGTTCCTC TCCCAAGCCT
  S
  AGTCAAGCCC ATCAGGGTCC TATTTCTCCG ATCTCCTCAC TAAGTAACTA TGTATTCGAA
  CATCATTCTC TCTGAGAATA CAATACAGTC ATTTCTGAAT GAAAAAAAAA AAAAAAGGAG
  AAATAAAAAG GAAAGGGACA TGCCTGGTCC TAGGTATAGT GGAGGAGAAA GTTTATTATA
  GATATGTGGG AGAGCACAGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321312497	CHEV_4_129055926	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254117200					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129272475 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14890	CpG island 14890	603 bp distal
Gm12980	predicted gene 12980	1162 bp upstream
Rr377177	regulatory region 377177	1132 bp upstream
Rr600215	regulatory region 600215	577 bp distal
Rr600216	regulatory region 600216	1101 bp distal
Rr600217	regulatory region 600217	310 bp distal
Tssr43497	transcription start site region 43497	844 bp upstream
Tssr43498	transcription start site region 43498	758 bp upstream
Tssr43499	transcription start site region 43499	732 bp upstream
Tssr43500	transcription start site region 43500	314 bp downstream
Zbtb8a	zinc finger and BTB domain containing 8a	654 bp upstream