rs254120216 SNP Detail

Summary

• ID
  rs254120216
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:106361733 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTGAGATG ATGCTCAAGG
  GCAGAGACCA TGGCTTTGGG TTGGATTCAT ACCGCCCAAA GGGAGACAGA ACAAAACTCC
  CCCCTGACCT CACATCCTTC TGCACCTATT CCCCAATGTC TGCTCTACCC ACAGCAGAAC
  TCAGGCTGCC TTCATGCACT GTCTCTATTT CCTTACTCTC CTGTTTACTT TTTAACCCAT
  Y
  CTACTCAGGT TAACCTCTTC AGTTAATCCA TATGAGTCAA GCTAAAGTCA CCATGATCTT
  TCCCAGCTAT CTCCAAGGTA ATAAACTCAA TAGCTAAGCC TCTGGCTGAA CTGTACCGGA
  ACTCTCAGCA TCTGAAAACC AGAAACCTCT CTTCCTGCCT CAAACTTACT TCTGGTCTTG
  GATTCTACAA TCCAACAGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375916385	MGP_WTSI_8_108159001	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254120216					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375916385	MGP_WTSI_8_108159001	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:106361733 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20943	CpG island 20943	576 bp proximal
Ctcf	CCCTC-binding factor	1467 bp upstream
Gm5914	predicted gene 5914	within coordinates
Gm38384	predicted gene, 38384	230 bp downstream
Rr173461	regulatory region 173461	1733 bp distal
Rr173462	regulatory region 173462	933 bp distal
Rr185893	regulatory region 185893	67 bp proximal
Tssr79169	transcription start site region 79169	680 bp upstream
Tssr79170	transcription start site region 79170	1387 bp upstream
Tssr79171	transcription start site region 79171	1408 bp upstream
Tssr79172	transcription start site region 79172	1489 bp upstream
Tssr79173	transcription start site region 79173	1825 bp upstream
Tssr82678	transcription start site region 82678	229 bp upstream
Tssr82679	transcription start site region 82679	1053 bp downstream