rs254124300 SNP Detail

Summary

• ID
  rs254124300
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:103284797 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTATCTGCT CTGCTGCAGA
  AAGGACATCT TAGCTTTGCT TATGGTCTCT GAGCTGCCTG ATTTAGCTAT CTGTTGGCTT
  TCATCAGTAT TTGACAGACA ATGCCCATGA TCCCATTGCT TCCTCCTAGC AAGAGAGTTA
  GGCCTGGTAA GTTCACTGAA CCTCCACCTC TTGGTTTTGT GTGTGTCCTC TGTGGGACAG
  R
  AGCACATCTG TGATGGGAGC ACAGGGGCAC ATCTGTAATT ATCTATTTGC TCTCATGTAC
  CCTGTAGTCC CCTGGCAGGT TTTTTAAGTT GGATGGCCTC ATTTACTGGT TTGGCAGTTT
  AGAGAACAGT GCACAGGGAA CTTGCCAGGG CTCCTGACAC TTATTATAAA ACGAATGACT
  CCATACTCCG CTTTAATCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss392295893	MGP_WTSI_14_103446578	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254124300					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss392295893	MGP_WTSI_14_103446578	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:103284797 () rs orientation: forward

Symbol	Name	Function Class
Acod1	aconitate decarboxylase 1	within coordinates
Gm41235	predicted gene, 41235	within coordinates
Rr496962	regulatory region 496962	1332 bp proximal
Tssr4512	transcription start site region 4512	1718 bp upstream
Tssr126971	transcription start site region 126971	341 bp downstream
Tssr126972	transcription start site region 126972	1519 bp upstream
Tssr126973	transcription start site region 126973	1640 bp upstream
Tssr126974	transcription start site region 126974	1894 bp upstream
Tssr126975	transcription start site region 126975	1904 bp upstream
Tssr126976	transcription start site region 126976	1921 bp upstream
Tssr126977	transcription start site region 126977	1943 bp upstream
Tssr126978	transcription start site region 126978	1984 bp upstream
Tssr130073	transcription start site region 130073	493 bp upstream
Tssr130074	transcription start site region 130074	1002 bp downstream
Tssr130075	transcription start site region 130075	1047 bp downstream
Tssr130076	transcription start site region 130076	1064 bp downstream
Tssr130077	transcription start site region 130077	1339 bp downstream
Tssr130078	transcription start site region 130078	1353 bp downstream
Tssr130079	transcription start site region 130079	1378 bp downstream