rs254128079 SNP Detail

Summary

• ID
  rs254128079
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:136802765 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCATAACT CACACTTCCA
  TCACCAACAT TACTATGAGC TACTACAACT GTTAACAGTG TCGGTGAATG GAACAAACAT
  GGCTTTGACC CACTAGGGAA CTTAGTGCTT CCAACCCTCT CAACCCAAAA TGCCAAGATG
  TGTTCTTTAC AGAAAAATAA CTGAACCACA AGGAAGAAAA GGGATTCTCA AATCACACAC
  Y
  TAAAAACTCA TTTGTTAAAA ATTCTAACAT AAAAAAGACT TAATTTTCTC CTGCTAGCCA
  GTCAAGTATG AGGAGAAATG TGTTAAGCAG CTTACACTCT CAACATTCTA ACCATGAGTC
  CATTTTAAGA ATTCTACATG ACCTCACACA CCCCACTCTA CCAACGCTGA ACTTAGGCCA
  CCATGAAAGA GTCTGCCAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321998848	CHEV_6_136774288	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254128079					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:136802765 () rs orientation: forward

Symbol	Name	Function Class
BC049715	cDNA sequence BC049715	1859 bp upstream
Cpgi18110	CpG island 18110	1802 bp proximal
Rr380176	regulatory region 380176	1257 bp upstream
Rr640072	regulatory region 640072	1516 bp proximal
Tssr59337	transcription start site region 59337	1978 bp upstream
Tssr59338	transcription start site region 59338	1994 bp upstream
Tssr63834	transcription start site region 63834	254 bp downstream
Tssr63835	transcription start site region 63835	326 bp downstream
Tssr63836	transcription start site region 63836	1947 bp downstream
Tssr63837	transcription start site region 63837	1980 bp downstream
Tssr63838	transcription start site region 63838	1999 bp downstream
Wbp11	WW domain binding protein 11	within coordinates