rs254129577 SNP Detail

Summary

• ID
  rs254129577
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:147885434 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTCTGTT AAATTTAAAT
  TCACTAGAGG AACTGGACAG AAAGGAACAC TTAATTTCAG CTTGGTTAAA CACAACGTAA
  TTGCAGTAGT GAAATCATTA TGCTAATTTA ATTAAAGATG TAAAGAGAAA AGCAAACATG
  TTAGATAAAA TGGTACCTAC CTACTTAAGC TTAATGAGTT TTCAACTTGA GCATTTTTTT
  Y
  CCTCAAACTG GAAATAGAAT TAGAGTTCTC ATCTATATCA CATCAAATGG TTAAACCTAC
  CATTTTTTTT TATTCCAGAC AGATTACAGA ATTACACATC TTAAAAGTTT TAGAGAAAAA
  GAAGAAGAAA TTGATTAGTC GTGAAATCTC AGGATAAGAA AGGATTTTTG TTTTTTAAGT
  TCAAAAATAT AATGGTGACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321716129	CHEV_5_148760200	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254129577					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:147885434 () rs orientation: forward

Symbol	Name	Function Class
Gm15721	predicted gene 15721	1258 bp downstream