rs254136393 SNP Detail

Summary

• ID
  rs254136393
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:123558707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGCCCGGCA GTCGCGCTCG
  GCTCCCTCAG TCCGCTCGCA CCCGGCCCGC TCGCGCTCCG CCGGTCCCGG CTCGCGTTTC
  CGCCTCCCCA CCCCTCGGCT CCGCTCCTCC CTCAGCCCGC CCCGGCGCGA CGGCGGCGGC
  GGCGCCTCCT GTCAGGAGCG CCGGGCCGGG CCGGTTCCCC GCCCCTCAGC CCGCCGCCTC
  S
  GCCGCCGGGC GCGTCCTCAG CCCCGGGGCT GCAGCCCCTG CTGGGCCGGG CGGGCCACCG
  ACCGACCACC GCCCGGGCGG GCCGCAGGCC CGAGCGGGGA CGCCGAGGAA GGCGGGCCGT
  CGCCTGAGGC CCGCCGCCAG GAGGCCCCCT GCACGTCCGA ACAGGAGGCC CGGCGGGCCG
  CAGCGGCCGG GAGACCCCCG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss363089322	MGP_WTSI_4_123342157	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs254136393					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363089322	MGP_WTSI_4_123342157	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:123558707 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14755	CpG island 14755	within coordinates
Gm12925	predicted gene 12925	967 bp upstream
Macf1	microtubule-actin crosslinking factor 1	within coordinates
Rr84970	regulatory region 84970	1694 bp proximal
Rr99952	regulatory region 99952	within coordinates
Rr377112	regulatory region 377112	807 bp downstream
Rr377113	regulatory region 377113	866 bp upstream
Tssr38865	transcription start site region 38865	82 bp downstream
Tssr43288	transcription start site region 43288	109 bp upstream
Tssr43289	transcription start site region 43289	554 bp downstream
Tssr43290	transcription start site region 43290	587 bp downstream