rs254137404 SNP Detail

Summary

• ID
  rs254137404
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172026340 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAGGGAGT GGTCTGATGA
  AGATCCAACC TTCCTCCTCT TCCTCCCCCT TGTTCAGGCC TTCTTTGGTG GGGGAGCCAA
  TTTGATGATT TCTTCTTCAG AGGGCTGCCG GATAATGTCT GAAAAAAAAA AGGGGGGTGT
  TCCCAGGGAT GGAGGTCGCC AGGCAGGCAG GCAGGCCCAT TAAGCATCAA CCTCTCCCCA
  W
  ATTCAGAATG ACTTTCTACT CTTAAAAATA CAGTCAGGCT GGGCGGTGGT GGCGCACGCC
  TTTAATCCCA GCACTTGGGA GGCAGAGGCA AGCAGATTTC TGAGTTCGAG GCCAGCCTGG
  TCTACAAGGT GAGTTCCAGG ACAGCCAGGG CTATACAGAG AAACCCTGTC TCAAAAAACC
  AAAATAAATA AATAAAATAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352400807	MGP_WTSI_1_174128904	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254137404					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352400807	MGP_WTSI_1_174128904	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172026340 () rs orientation: forward

Symbol	Name	Function Class
Pea15a	proliferation and apoptosis adaptor protein 15A	within coordinates
Rr28998	regulatory region 28998	1660 bp proximal
Rr32002	regulatory region 32002	1941 bp distal
Tssr10176	transcription start site region 10176	537 bp downstream
Tssr10177	transcription start site region 10177	148 bp downstream
Tssr10178	transcription start site region 10178	102 bp downstream
Tssr15149	transcription start site region 15149	1009 bp upstream
Tssr15150	transcription start site region 15150	899 bp upstream
Tssr15151	transcription start site region 15151	862 bp upstream
Tssr15152	transcription start site region 15152	712 bp upstream
Tssr15153	transcription start site region 15153	694 bp upstream
Tssr15154	transcription start site region 15154	571 bp upstream
Tssr15155	transcription start site region 15155	430 bp upstream
Tssr15156	transcription start site region 15156	257 bp upstream
Tssr15157	transcription start site region 15157	214 bp upstream
Tssr15158	transcription start site region 15158	369 bp downstream
Tssr15159	transcription start site region 15159	421 bp downstream
Tssr15160	transcription start site region 15160	449 bp downstream
Tssr15161	transcription start site region 15161	1711 bp downstream
Tssr15162	transcription start site region 15162	1768 bp downstream
Tssr15163	transcription start site region 15163	1784 bp downstream