rs254137829 SNP Detail

Summary

• ID
  rs254137829
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:95240803 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTATTCAAA TGTAAGAGAA CTAAATTTGG
  AGTTCAAGTT CTGTAAAGTA AACTAGAGTA GGCAGATCAC AGCCCCAGGT ATTTGCTaag
  gtaatataca aactttctct cttccataag ttcagggata gttttgcagc ttgaggcagc
  Y
  catagcaaaa actagttaac aggggcacaa ttttcttgtt ggttttattt caaaaggatg
  actgtaggtc tctggaaatt gacaagagag gtttttacaa atatttacac tttaaagggg
  gaaaacctga ataaacaact ttacattttc                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319848313	CHEV_1_97209655	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254137829					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:95240803 () rs orientation: forward

Symbol	Name	Function Class
Cpgi614	CpG island 614	350 bp proximal
Fam174a	family with sequence similarity 174, member A	550 bp upstream
Rr396183	regulatory region 396183	283 bp upstream
Rr416130	regulatory region 416130	55 bp proximal
Tssr8214	transcription start site region 8214	529 bp upstream
Tssr8215	transcription start site region 8215	600 bp upstream
Tssr8216	transcription start site region 8216	1009 bp upstream
Tssr8217	transcription start site region 8217	1028 bp upstream
Tssr8218	transcription start site region 8218	1046 bp upstream
Tssr8219	transcription start site region 8219	1072 bp upstream
Tssr13058	transcription start site region 13058	977 bp downstream