rs254138466 SNP Detail

Summary

• ID
  rs254138466
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:128064608 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAAGTGTG CTCTTAACCA
  GCTCTCCCGT GCCCCCAGCT GCACACTGTC TCATTGAAGG AGAGAAAAGG TCTGGTGGCC
  AACAGAGAGC TTTGGGGTAG CTTATAGATC TGCTTAGCTG CATACTGAAA CCCTACCTGA
  ATTTACAGGT ACAGTGGGAG ATTGGAGGCT GCTTCTCCAT GAGCCTAGGA AGGAGAGAGT
  R
  AGTCTGAACG AGAAACGGAT TATATCCCAA AGTGAAAAAG GAAAGAGCAA CTGGGCGTGG
  TGGCGCACGC CTTTGATCCC AGCACTTGGG AGGCAGAGGC AGGCGAATTT CTGAGTTCGA
  GGCCAGCGTG GTCTACAGAA TGAGTTCCAG GACAGCCAAG GCTATACACA GCAAATCCTA
  TCTCGAAAAA GCCAAAAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373107358	MGP_WTSI_7_135606398	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254138466					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373107358	MGP_WTSI_7_135606398	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:128064608 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19791	CpG island 19791	646 bp distal
Gm32816	predicted gene, 32816	within coordinates
Rr368466	regulatory region 368466	947 bp downstream
Rr656041	regulatory region 656041	1898 bp distal
Rr656042	regulatory region 656042	795 bp distal
Rr656043	regulatory region 656043	23 bp distal
Rr656044	regulatory region 656044	537 bp distal
Tial1	Tia1 cytotoxic granule-associated RNA binding protein-like 1	1167 bp upstream
Tssr2414	transcription start site region 2414	1689 bp upstream
Tssr69425	transcription start site region 69425	910 bp downstream
Tssr75110	transcription start site region 75110	1707 bp upstream
Tssr75111	transcription start site region 75111	1558 bp upstream
Tssr75112	transcription start site region 75112	1497 bp upstream
Tssr75113	transcription start site region 75113	1484 bp upstream
Tssr75114	transcription start site region 75114	1324 bp upstream
Tssr75115	transcription start site region 75115	1262 bp upstream
Tssr75116	transcription start site region 75116	1222 bp upstream