rs254138624 SNP Detail

Summary

• ID
  rs254138624
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:46451902 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCGGCCGGG CGGAGGCCGG
  GCCTGCCGAG GCGCCGCGCC GCCGCCAGGC CCGCCGCGGG GCCGGGCCGG GTTCCATGCG
  CCCCGCGGCC GACAGGGCCT CGCCGCCGAG GAGGGTGTTC GGGTCCCTGA GGGGGGCGCG
  GAGCCCCCCT CGGGCGCGGC CTGGCGCGGA ACGGGGGAGG GGCGGGCCTG GCGGCGGAGG
  T
  GGCGCAACCG CCGCCCCTCC CGAGGCCAAG TTTGAAAAAA GGATGCGCTT CCCGCCATTT
  TTTCAAGCCT AAAAAAATCC AACTTTGCCC CTCCTTTGCC CGGCTCGCCT TCGCCCTCGG
  CCTTGCCCAC GCGGGCTCCC CGGGCCAGCC GGCCCGGCAC CGTCACCGCC GCGGTGGCTT
  CGCCCTCCCC CGCGCCGCCG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	CE/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
ss361391781	MGP_WTSI_4_46464774	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	CE/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
rs254138624					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361391781	MGP_WTSI_4_46464774	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:46451902 () rs orientation: forward

Symbol	Name	Function Class
Anp32b	acidic nuclear phosphoprotein 32 family member B	within coordinates
Cpgi14257	CpG island 14257	within coordinates
Gm69233	predicted gene, 69233	409 bp upstream
Rr100990	regulatory region 100990	within coordinates
Tssr37119	transcription start site region 37119	1015 bp downstream
Tssr37120	transcription start site region 37120	999 bp downstream
Tssr37121	transcription start site region 37121	908 bp downstream
Tssr37122	transcription start site region 37122	851 bp downstream
Tssr37123	transcription start site region 37123	791 bp downstream
Tssr37124	transcription start site region 37124	776 bp downstream
Tssr37125	transcription start site region 37125	745 bp downstream
Tssr37126	transcription start site region 37126	258 bp upstream
Tssr41577	transcription start site region 41577	416 bp upstream
Tssr41578	transcription start site region 41578	670 bp downstream