rs254139564 SNP Detail

Summary

• ID
  rs254139564
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156975978 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTAAATCCGC AACCCCTTTT AAAGCTTTCT TAAAGTCAGT
  CCTTCAGTTA GGCACAAGGG GCTCCACCCC ACAAGAAGTA AAGTTCACTG AATTTGAAAA
  Y
  CATAACCACG GAGGGGCCAC TTTCCAAGCG AACACCTCCG GGGATCGATC ATGCAAGGGG
  TTAAGCTTCA CAGCCACCAA CCAAGAAAAA AAAAAAAAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320584427	CHEV_2_156959794	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254139564					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156975978 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12569	CpG island 12569	493 bp proximal
Rr397438	regulatory region 397438	988 bp upstream
Rr568443	regulatory region 568443	1138 bp proximal
Samhd1	SAM domain and HD domain, 1	within coordinates
Tssr21224	transcription start site region 21224	426 bp upstream
Tssr21225	transcription start site region 21225	1743 bp upstream
Tssr27158	transcription start site region 27158	84 bp upstream
Tssr27159	transcription start site region 27159	80 bp downstream
Tssr27160	transcription start site region 27160	1027 bp downstream
Tssr27161	transcription start site region 27161	1054 bp downstream
Tssr27162	transcription start site region 27162	1142 bp downstream