rs254143940 SNP Detail

Summary

• ID
  rs254143940
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:101213419 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCTACATC CATCCCGCTC
  TGAGCCTGAC TGTGGCGAGG GGTCCCCTAG ACCTTCACCT GCATCCCTGC AGCTTCTTTG
  GATGTTTTTA TAACTGGGGT TTTCACATAC ACATGTGTAC ACATGTAAAC ACGCATAGGG
  ACATGCATAC ATGCTTCCTG CTCCATTATA GAACATACCT TCCTTCCTGC ACCACCACTC
  M
  CTCAAGCCCT TCACATACAA ACATCTCAGC AGGTGATAGT TGTCTTAGTC ATCCACCCAG
  GCAAAAGTCC CAGGCCCACC CTCTTCTGAT AATGTAGCAG TTGGTGCCAG GGTAAGCTGA
  AGGAGAACCG AGAGCCGAGC AGCAGAGGGC TCATGAAGGC CTTCCCTCTG TGGCTCAGGT
  TCTTTTTGGT GTTATGCAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384476955	MGP_WTSI_11_101183907	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254143940					SNP	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384476955	MGP_WTSI_11_101183907	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:101213419 () rs orientation: forward

Symbol	Name	Function Class
Psme3	proteaseome (prosome, macropain) activator subunit 3 (PA28 gamma, Ki)	within coordinates
Rr456946	regulatory region 456946	934 bp proximal
Tssr105078	transcription start site region 105078	1856 bp downstream
Tssr105079	transcription start site region 105079	677 bp downstream
Tssr105080	transcription start site region 105080	498 bp downstream
Tssr105081	transcription start site region 105081	404 bp downstream
Tssr105082	transcription start site region 105082	2 bp downstream
Tssr105083	transcription start site region 105083	253 bp upstream
Tssr105084	transcription start site region 105084	440 bp upstream