rs254148195 SNP Detail

Summary

• ID
  rs254148195
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:79830454 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTCTTCCA TGTCCCTGCA
  GATGGGCTAC ACGCAGGGCG CCAACCAGAG CGGTCAGGTC TTCGGACTGG GGCGGCAGAT
  CTACGATCCC AAGTATTGCC CACAGGGCTC TGCAGCTGAC GGGGCTCCTG CGGGTGACGG
  CCAAGGCGAG GCCCCAGAGT ACCTGGCCTA CTGCCAGGAG GAAGCTGGCT ACTGAGCACC
  C
  AGCATGCCAG CTCCCCCACT GCATCAGCAG CCCTGTGTGG GCTTTGGGGT TTTCATTGTG
  TTTTGTGTTT GGAAACTGGT CATCTCTTTG TATCTCTCTC TGGCCTGGAA CTCACTGCAA
  TCCTCCTGCC TCAGCTTCCT AAGGGCTGGG ATGACAGATC TGTGCTATCT ATGCTCCTTC
  CTCACCCACC ATGCCTCGCT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381012790	MGP_WTSI_10_79457365	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254148195					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381012790	MGP_WTSI_10_79457365	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:79830454 () rs orientation: forward

Symbol	Name	Function Class
Abca7	ATP-binding cassette, sub-family A member 7	1874 bp upstream
Cnn2	calponin 2	within coordinates
Cpgi1834	CpG island 1834	1764 bp proximal
Rr216686	regulatory region 216686	1454 bp distal
Rr225140	regulatory region 225140	1346 bp proximal
Rr402033	regulatory region 402033	1667 bp upstream
Tssr94446	transcription start site region 94446	225 bp upstream
Tssr94447	transcription start site region 94447	398 bp upstream
Tssr94448	transcription start site region 94448	458 bp upstream
Tssr94449	transcription start site region 94449	638 bp upstream
Tssr94450	transcription start site region 94450	1835 bp upstream
Tssr94451	transcription start site region 94451	1859 bp upstream
Tssr94452	transcription start site region 94452	1895 bp upstream
Tssr94453	transcription start site region 94453	1922 bp upstream
Tssr98373	transcription start site region 98373	699 bp downstream
Tssr98374	transcription start site region 98374	763 bp downstream