rs254148972 SNP Detail

Summary

• ID
  rs254148972
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:36073993 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gggtttcta catgtagacc tacatgtaga
  ctaggctggc ctccaactca aagatccaac tgcctctgcc tctcaagcac taggattaaa
  ggtgtgtgcc accatcgccc tcctcctcct cctcttcctc GATATCTTTG tctctctgtc
  W
  ctgtctctct ctctttccct ctgtgtgtgt gccatgtgtg tgggtgcctg tagaggccag
  aagggagcac ccaatccctt gcaacgattc tcccaggaag tcttggcacc tgacatgatg
  ttttgggatt aatgatctct ggtcctctgg                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325584115	CHEV_18_36100594	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254148972					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:36073993 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9858	CpG island 9858	964 bp distal
Gm56493	predicted gene, 56493	within coordinates
Rr536027	regulatory region 536027	1575 bp distal
Rr536028	regulatory region 536028	1283 bp distal
Rr536029	regulatory region 536029	1062 bp distal
Rr536030	regulatory region 536030	523 bp distal
Rr536031	regulatory region 536031	968 bp proximal
Rr536032	regulatory region 536032	997 bp proximal
Rr536033	regulatory region 536033	1469 bp proximal
Tssr150585	transcription start site region 150585	1429 bp upstream