rs254152403 SNP Detail

Summary

• ID
  rs254152403
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13253164 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCGATAAG AACAGCTGCC
  CTGGAGGAAG AGTGGGGAGG GAAGATAGAA GGCTCCAGCA GAGGTTGGTC CTCTTATCTC
  ACCAAGCTCC CCTATGGGGC TAGGAAACCT AAAGGCTGAG TGCCTCTAAA TAAGTAGCCT
  CTCTCACTGC ATACCCACCT CCACCATGTA TCTTAACATA GCCTGACCCA CAGTGGCCCA
  Y
  AGTGGTCCTC CATACCCTTC CCAGTCCTAA GCTACCTTCT GAAGAAGCCA CTCTAAAGCC
  TGGGGTAGAC AGCACGGGGC AGTGCAAACT CAGCACAAGG ACCCAGGGTC TGAGAGAAAT
  CTAGCTTTAC TTCAGGAGTT AAGCATTTCT GAGGCTGTTC CCTCAGAGTA AAGCAAATGG
  AGACAGACCC AAGAAGAGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322505072	CHEV_8_13203164	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254152403					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13253164 () rs orientation: forward

Symbol	Name	Function Class
2810030D12Rik	RIKEN cDNA 2810030D12 gene	1374 bp downstream
Cpgi20110	CpG island 20110	1730 bp distal
Gm56825	predicted gene, 56825	931 bp upstream
Rr659874	regulatory region 659874	1681 bp distal
Rr659875	regulatory region 659875	1451 bp distal
Rr659876	regulatory region 659876	942 bp distal
Rr659877	regulatory region 659877	441 bp distal
Rr659878	regulatory region 659878	560 bp proximal
Rr659879	regulatory region 659879	651 bp proximal
Rr659880	regulatory region 659880	805 bp proximal
Tssr80429	transcription start site region 80429	1736 bp upstream