rs254153006 SNP Detail

Summary

• ID
  rs254153006
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:105281521 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTATTATT ATTGTTGTTC
  ATGGTGGTGT TGGTATTTCT TTTTCAGCTC TCAAAGACTA AACAACAAAC CAAAGAGTAC
  ACATGGAGGG TCACATGGCG CCAGCTGTGT ATGTAGAGAG GATGGCCTTC ATCAATGGGA
  GGAGAGGCCC TTGGTCATAT GAAGGTATGA GGATTCCCCA GTGTAGTATA ATGCCAAGGT
  R
  GGAAGGTACA AGTGGGTAAG TAGGTGGGAG AGCACCCTCA TAGAAGAAGT CAGAGGGGGA
  GAAGATAGGT TTCTAGAGGG GAATCCTGAA AGGGGGATAT CCCTTGAAAT ATAAATAAAT
  AAAATAACCA ATAAAAAATT CTAATTAAAT AAAAAAGAAT TTCCAGTATG CACTCCCTTT
  GGACTGTTGA TAAGTTTTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366134859	MGP_WTSI_5_105562674	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254153006					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366134859	MGP_WTSI_5_105562674	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:105281521 () rs orientation: forward

Symbol	Name	Function Class
Gbp4	guanylate binding protein 4	within coordinates
Tssr1571	transcription start site region 1571	1869 bp upstream
Tssr52271	transcription start site region 52271	1914 bp upstream
Tssr52272	transcription start site region 52272	1851 bp upstream
Tssr52273	transcription start site region 52273	1773 bp upstream
Tssr52274	transcription start site region 52274	1742 bp upstream
Tssr52275	transcription start site region 52275	1717 bp upstream
Tssr52276	transcription start site region 52276	1683 bp upstream
Tssr52277	transcription start site region 52277	1667 bp upstream
Tssr52278	transcription start site region 52278	1640 bp upstream
Tssr52279	transcription start site region 52279	1578 bp upstream
Tssr52280	transcription start site region 52280	1527 bp upstream
Tssr52281	transcription start site region 52281	1496 bp upstream
Tssr52282	transcription start site region 52282	1479 bp upstream
Tssr52283	transcription start site region 52283	1393 bp upstream
Tssr52284	transcription start site region 52284	1336 bp upstream
Tssr52285	transcription start site region 52285	1304 bp upstream
Tssr52286	transcription start site region 52286	1274 bp upstream
Tssr52287	transcription start site region 52287	1259 bp upstream
Tssr52288	transcription start site region 52288	1245 bp upstream
Tssr52289	transcription start site region 52289	1165 bp upstream
Tssr52290	transcription start site region 52290	1058 bp upstream
Tssr52291	transcription start site region 52291	716 bp upstream
Tssr52292	transcription start site region 52292	236 bp upstream
Tssr52293	transcription start site region 52293	54 bp upstream
Tssr52294	transcription start site region 52294	19 bp downstream
Tssr52295	transcription start site region 52295	337 bp downstream
Tssr52296	transcription start site region 52296	959 bp downstream
Tssr52297	transcription start site region 52297	1037 bp downstream
Tssr52298	transcription start site region 52298	1130 bp downstream