rs254153198 SNP Detail

Summary

• ID
  rs254153198
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:129854104 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCGGCCGG CGCCCAGGTC
  GGAGCAGACG GTCGTGCGGG CCGCCGACCC CTCCACTCCG GCCTCGGTCC GCGCGGGAGG
  GCAGGCCTGG ATGGCAGGCG GCCGGCGGCC CCGCCCTGCC GGCCCTTCGG TCGCTCCCCT
  CGCCGCATCG CGGCCTCCAG GCTCCACCGC GGCCTCGGGG CCCCACCGCG GCCTCCCCGG
  Y
  CCGGCCCTGC CCTGCCCGCC CCCAGCCACC GCGCAGGCCG CCCGCCCGCC CGCCCGCTCT
  CCCTCCCTTC CGCCTGCCTA GGCCCCACGC CGCGCCCCGG CCTCCCGCCT CACCGTTCTG
  CTGCGGCGGT GCCAGGCCGG AGACAGCTCC GCCGAGCTTG GGCGGCATCC GGGCGCCGGC
  GGCCGGGTGA GGGGACCCGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359703467	MGP_WTSI_3_129763373	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	C	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254153198					SNP	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	C	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359703467	MGP_WTSI_3_129763373	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129854104 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13821	CpG island 13821	within coordinates
Rr585124	regulatory region 585124	within coordinates
Rr585125	regulatory region 585125	416 bp proximal
Rr585126	regulatory region 585126	442 bp proximal
Sec24b	SEC24 homolog B, COPII coat complex component	within coordinates
Tssr31665	transcription start site region 31665	312 bp upstream
Tssr35653	transcription start site region 35653	218 bp downstream
Tssr35654	transcription start site region 35654	280 bp downstream
Tssr35655	transcription start site region 35655	355 bp downstream
Tssr35656	transcription start site region 35656	383 bp downstream
Tssr35657	transcription start site region 35657	395 bp downstream
Tssr35658	transcription start site region 35658	564 bp downstream
Tssr35659	transcription start site region 35659	1030 bp downstream
Tssr35660	transcription start site region 35660	1112 bp downstream