rs254155889 SNP Detail

Summary

• ID
  rs254155889
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:53933641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCGGTAAGG GGAGGCCCAC
  ACGTCCTGAC AGGCGCGAGC CGCCGGAGCC GGGGCGAGGC CTGAGGGGTC GGGGCCCTGG
  GAGGCGCCGC GGCCGCTTTC CGGGGTGCCA CGGCCCGGGG CGCCGGAGCC TCGGAGCCGC
  TGCCCGCGCG GGGCCGGCGG GCGGGACACG GGGAGCGGCA GGCTGCCCCC TGACAGCGCC
  S
  GGCCGGGCCT ACTGCGGAGC GGGCGGCCGG GACAGCGCCG GGGCGCGGGC GCGGGCCCGG
  GGCGGCGAGT CAGTCGCGCT CCGGCTGCTC CGGTCTCTCG GCGCCTCCCG GCCGGGACTG
  CGGGGCTGCC CGGGTCGCGA GGACGCTTGG CGCCGGGCGG GCGGGCGGGC GGGAGGGCGG
  GCGCGGCCGT AGGGCTGTGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402802526	MGP_WTSI_19_54019700	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254155889					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402802526	MGP_WTSI_19_54019700	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:53933641 () rs orientation: forward

Symbol	Name	Function Class
Bbip1	BBSome interacting protein 1	583 bp upstream
Cpgi11070	CpG island 11070	within coordinates
Rr394562	regulatory region 394562	524 bp downstream
Rr549684	regulatory region 549684	1041 bp distal
Rr549685	regulatory region 549685	1298 bp distal
Rr549686	regulatory region 549686	894 bp distal
Rr549687	regulatory region 549687	761 bp distal
Rr549688	regulatory region 549688	320 bp distal
Rr549689	regulatory region 549689	within coordinates
Shoc2	Shoc2, leucine rich repeat scaffold protein	within coordinates
Tssr5553	transcription start site region 5553	946 bp upstream
Tssr157049	transcription start site region 157049	1114 bp downstream
Tssr157050	transcription start site region 157050	343 bp downstream
Tssr157051	transcription start site region 157051	303 bp downstream
Tssr157052	transcription start site region 157052	706 bp upstream
Tssr159836	transcription start site region 159836	984 bp upstream
Tssr159837	transcription start site region 159837	955 bp upstream
Tssr159838	transcription start site region 159838	723 bp upstream
Tssr159839	transcription start site region 159839	578 bp upstream