rs254157529 SNP Detail

Summary

• ID
  rs254157529
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:58599758 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACGCTAAGA CACGTGTGCG
  GCCGACCCGG CACTCAGGGA CTGGCAGAGC CACCCTGCGG CCCGCGCAGC TCCGCCCGAC
  CCAGCTGGCA GCGCCCGAGC GGTTTCCTCG CTGGGAGCCC TTGAATGAGT CGATCGCCGC
  CGCGTGGGGT CGCTTCTCTG CGACAGTGGA AGCCGGCAGC CCAGGGAAAG GACGTAGCCC
  R
  AGTCTCCCGA CCCTTCCCAG GGGACCTACG CCGACCCGCA CCGACTCCAG CTAGAAGGGC
  AACTGCTGGC CCGGCGTGGG CGTGGAGGGC GCGCGAGTGC GCCGGGGGCG GGGCGGGGCT
  GGGCGGGGCG GGGGGCGGGG CTCGGAATCC CACGTTTCTT TTAGCCATTG ACGCGCTGGA
  GCAGCTGGCG ATCAGGCTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358103453	MGP_WTSI_3_58496259	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254157529					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358103453	MGP_WTSI_3_58496259	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58599758 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930593A02Rik	RIKEN cDNA 4930593A02 gene			252 bp upstream
Cpgi13205	CpG island 13205			1345 bp distal
Cpgi13206	CpG island 13206			within coordinates
Rr367441	regulatory region 367441			1542 bp downstream
Rr577266	regulatory region 577266			1448 bp distal
Rr577267	regulatory region 577267			989 bp distal
Rr577268	regulatory region 577268			277 bp distal
Rr577269	regulatory region 577269			44 bp distal
Rr577270	regulatory region 577270			53 bp proximal
Rr577271	regulatory region 577271			294 bp proximal
Siah2	siah E3 ubiquitin protein ligase 2			mRNA-UTR
				Noncoding-Transcript-Variant
Tssr29217	transcription start site region 29217			153 bp upstream
Tssr29218	transcription start site region 29218			274 bp upstream
Tssr33366	transcription start site region 33366			322 bp upstream
Tssr33367	transcription start site region 33367			214 bp upstream
Tssr33368	transcription start site region 33368			54 bp downstream
Tssr33369	transcription start site region 33369			88 bp downstream