rs254159907 SNP Detail

Summary

• ID
  rs254159907
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137446033 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTTTCT TGGATTTTCC
  CTTTCAGCAA TACTGACTTC ATTGTTCAGT GATGGACTCT GTTTGGGGGT GCCAAGATAG
  GGTTGGGATA AGGAAGGGCT GAGAGGTGGG ACCTTGGTTA AAGTCCCTGA GAGCATCGGG
  AGACCTTGAA ACCCCTCAGC TTCCATTTTC CCATCTGTCA CAAGTTGCCA TCTTAAGACA
  W
  GTTTTGCCAT TTTGGGGATG GGCAGGGAAC ACACATCCCT AGATGTGCTC TCCGCTTGCT
  CCACCCCACC CCACCCCCAG CCCTACACCC TCCGGGCACC CCTGCCCCAC ACCCTATAGC
  CAGGCTATGA AGGCCTGTGG CCCTGTGCTC AGTTGCAGCG GAAGCGGCAT ATCGGGAACG
  ACATCGTCGC TGTGGTCTTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363422130	MGP_WTSI_4_137274637	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254159907					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363422130	MGP_WTSI_4_137274637	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137446033 () rs orientation: forward

Symbol	Name	Function Class
Gm52682	predicted gene, 52682	1238 bp downstream
Rap1gap	Rap1 GTPase-activating protein	within coordinates
Rr86556	regulatory region 86556	768 bp proximal
Rr100343	regulatory region 100343	567 bp proximal
Tssr39776	transcription start site region 39776	1367 bp downstream
Tssr39777	transcription start site region 39777	1341 bp downstream
Tssr39778	transcription start site region 39778	492 bp upstream
Tssr39779	transcription start site region 39779	522 bp upstream
Tssr39780	transcription start site region 39780	798 bp upstream
Tssr39781	transcription start site region 39781	963 bp upstream