rs254162769 SNP Detail

Summary

• ID
  rs254162769
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:80632127 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGGCTCAG AAAAGAGGTA
  CCTTTATTAA AGAGCAGGCT GAGCACTGAG GCCAGCACCC ATGCCCTGCT CTATCAGCAG
  GAGGGGGGGG GGGGGTTCAC AGCTTCATCT AGCATTATAC ATTCATCTGG CAATGGATAG
  GGGAGCTGTG CCAGGCTCGG TCCCTGGATG TGGACACTCA AGGGGTGCTG GCAGGGAGAT
  K
  GCATGGAGAA CGAGGACCAC AGACCCTGCC CACCTCCTCT GGACCTTTTG AACAGATGTA
  TTAAAACCTA TATTAAAAAA AAAAAAACTT CCCAGGGTAG CCAGGGGCCC AGAGAGGGTC
  AGTCCAACAC ATTTAACTGG GAGCCAATAC AAGTAGTCCG CCCATCCTTA GGCAGGCTAT
  TCAGCTGGAA CCTGGCCTCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381025156	MGP_WTSI_10_80259038	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254162769					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381025156	MGP_WTSI_10_80259038	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80632127 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1908	CpG island 1908	1189 bp proximal
Dot1l	DOT1 like histone lysine methyltransferase	832 bp downstream
Plekhj1	pleckstrin homology domain containing, family J member 1	within coordinates
Rr435393	regulatory region 435393	1415 bp proximal
Rr435394	regulatory region 435394	1916 bp proximal
Tssr94606	transcription start site region 94606	1660 bp upstream
Tssr94607	transcription start site region 94607	1738 bp upstream
Tssr98506	transcription start site region 98506	66 bp downstream
Tssr98507	transcription start site region 98507	1568 bp downstream
Tssr98508	transcription start site region 98508	1626 bp downstream
Tssr98509	transcription start site region 98509	1676 bp downstream
Tssr98510	transcription start site region 98510	1699 bp downstream
Tssr98511	transcription start site region 98511	1898 bp downstream
Tssr98512	transcription start site region 98512	1927 bp downstream