rs254165378 SNP Detail

Summary

• ID
  rs254165378
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:52315134 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAATG CAAATATGTA ACCATACTCA
  C
  CTCCAAAAGT GCCAGGTTTG GACCC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320303832	CHEV_2_52280642	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254165378					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:52315134 () rs orientation: forward

Symbol	Name	Function Class
A430018G15Rik	RIKEN cDNA A430018G15 gene	within coordinates
Arl5a	ADP-ribosylation factor-like 5A	248 bp upstream
Cpgi11647	CpG island 11647	within coordinates
Rr556939	regulatory region 556939	232 bp distal
Rr556940	regulatory region 556940	167 bp distal
Rr556941	regulatory region 556941	within coordinates
Tssr494	transcription start site region 494	179 bp upstream
Tssr17726	transcription start site region 17726	101 bp downstream
Tssr17727	transcription start site region 17727	119 bp upstream
Tssr24072	transcription start site region 24072	316 bp upstream
Tssr24073	transcription start site region 24073	300 bp upstream
Tssr24074	transcription start site region 24074	206 bp upstream