rs254175574 SNP Detail

Summary

• ID
  rs254175574
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:24915358 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGGCCGGG GCAGGAGGCG
  GGGCCTGGCG GCGGGGCGGG GCTGGGGGCC GAGGCGGCGG CCCGGGTCGC GGAGGCGTAG
  GAGGCCTCGG GGCGGGAGGA GGCGGCGCCG GAGGCCCAGG CCGAGGCGGC ACTGGCGGCT
  GCGGCTCCGG CTCTGCGGGT ACTCTTGCGC CTGGTGACCC GCCGCGAGCC CGGCGTGCGT
  R
  GTCCATGGTG GGGTTCAGGC TTCCTCCGGC AGATGTGAAG TGTGTCGTGG AAGGCGCGCT
  GCGGCTGTGC TGAGATCTTG GACTGAGATG AGTTCCGAGA TGCTTCTCGC ATCACCCCCA
  TCGCTTGGCT CAGACACCTA AGGGCGGCAA AATTTGGGGT CTTCCTGCCT TACGACGTGC
  CCACCTACAC GCTTCTCGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397861066	MGP_WTSI_17_24833329	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254175574					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397861066	MGP_WTSI_17_24833329	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24915358 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8739	CpG island 8739	within coordinates
Gfer	growth factor, augmenter of liver regeneration	293 bp upstream
Noxo1	NADPH oxidase organizer 1	mRNA-UTR
Rr523392	regulatory region 523392	140 bp distal
Rr523393	regulatory region 523393	305 bp distal
Rr523394	regulatory region 523394	135 bp proximal
Tssr5034	transcription start site region 5034	172 bp downstream
Tssr143060	transcription start site region 143060	64 bp downstream
Tssr143061	transcription start site region 143061	276 bp upstream
Tssr143062	transcription start site region 143062	1836 bp upstream
Tssr143063	transcription start site region 143063	1910 bp upstream
Tssr143064	transcription start site region 143064	1965 bp upstream
Tssr146764	transcription start site region 146764	388 bp upstream
Tssr146765	transcription start site region 146765	276 bp upstream
Tssr146766	transcription start site region 146766	248 bp upstream
Tssr146767	transcription start site region 146767	218 bp upstream
Tssr146768	transcription start site region 146768	178 bp upstream
Tssr146769	transcription start site region 146769	121 bp downstream
Tssr146770	transcription start site region 146770	157 bp downstream
Tssr146771	transcription start site region 146771	185 bp downstream