rs254176243 SNP Detail

Summary

• ID
  rs254176243
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:74700782 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TAGAATGAA TCGTGGATTC CCAGAACGGA
  GCCTTTACTT GCAGGACTAC AGTTCCCAGA ATTCCGCTCG CAAGAGTTCC ACCGTGTCGA
  CAAGTTTGCG CGTGCGCAAA TTCCTTGCAC TTTctctctc cctcccccca agtccctcct
  Y
  ctcccccccc cccccccccc ATTCTCTAGG CTGCACAAGG GCTGGGATTC GGCGCGCTTG
  CCTCGGGCCC TCCCCCTCCC ATTCCTTTCT GGCCTTAGAT CTGTCCGCTG GGGGCGCGCT
  CTGTGTGGGA CAGAAAGCGG CAGAGCGTGG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319795109	CHEV_1_74708197	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254176243					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:74700782 () rs orientation: forward

Symbol	Name	Function Class
Cpgi388	CpG island 388	within coordinates
Gm70804	predicted gene, 70804	210 bp upstream
Rr371526	regulatory region 371526	within coordinates
Rr413230	regulatory region 413230	229 bp distal
Rr413231	regulatory region 413231	within coordinates
Rr413232	regulatory region 413232	133 bp proximal
Rr413233	regulatory region 413233	175 bp proximal
Tssr7442	transcription start site region 7442	55 bp downstream
Tssr7443	transcription start site region 7443	10 bp upstream
Tssr7444	transcription start site region 7444	75 bp upstream
Tssr7445	transcription start site region 7445	91 bp upstream
Tssr7446	transcription start site region 7446	171 bp upstream
Tssr7447	transcription start site region 7447	473 bp upstream
Ttll4	tubulin tyrosine ligase-like family, member 4	22 bp upstream