rs254177230 SNP Detail

Summary

• ID
  rs254177230
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:107904659 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTGT GTGTGTGTGT GTGTGTGTGT
  R
  TGTGTGTGTG TGTGTGTGTG TGTCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324151904	CHEV_12_109176610	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254177230					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:107904659 () rs orientation: forward

Symbol	Name	Function Class
Bcl11b	B cell leukemia/lymphoma 11B	within coordinates
Rr387761	regulatory region 387761	70 bp downstream
Tssr117636	transcription start site region 117636	246 bp downstream
Tssr117637	transcription start site region 117637	272 bp downstream
Tssr117638	transcription start site region 117638	337 bp downstream
Tssr117639	transcription start site region 117639	352 bp downstream
Tssr117640	transcription start site region 117640	373 bp downstream
Tssr117641	transcription start site region 117641	393 bp downstream
Tssr117642	transcription start site region 117642	430 bp downstream
Tssr117643	transcription start site region 117643	548 bp downstream
Tssr117644	transcription start site region 117644	659 bp downstream
Tssr117645	transcription start site region 117645	690 bp downstream
Tssr117646	transcription start site region 117646	730 bp downstream
Tssr117647	transcription start site region 117647	746 bp downstream
Tssr117648	transcription start site region 117648	806 bp downstream
Tssr117649	transcription start site region 117649	832 bp downstream
Tssr117650	transcription start site region 117650	870 bp downstream