rs254178949 SNP Detail

Summary

• ID
  rs254178949
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:52817040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTGC AACTGTACTT GTATTCTATT
  K
  CTGTGATAAA AGCCATGACC AAAAA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324630117	CHEV_14_53199258	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254178949					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:52817040 () rs orientation: forward

Symbol	Name	Function Class
Rr491934	regulatory region 491934	848 bp proximal
Rr491935	regulatory region 491935	924 bp proximal
Tcra	T cell receptor alpha chain	within coordinates
Trav3-1	T cell receptor alpha variable 3-1	1179 bp upstream
Tssr125465	transcription start site region 125465	1001 bp upstream