rs254179895 SNP Detail

Summary

• ID
  rs254179895
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72219295 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGTAATTT GTTCTGAAAT
  GCTGTAATTA TGAGGCACGG TGAGGAGAGC ACGTGCACCA TCCTTTTATT ATCGGTCTCC
  ATTTTTGTTT TAACCTTTTG TCTGAGCCTT GGCTGGAGAG GAAGGAGGTG AGCGCAGACA
  GGGCCTGCTG GAGACACACT GGGCGAGCTT GTTCAGGGAC TGCCTTCAGA GCCACGGGAT
  W
  AACCTTGAGA ACAATGACGT CATTCTGTCT TTAAATGTTT TGTTGTTGTT ATTATTGTTT
  TTTGGGGTCT TTTTAGACCA ACTGATTTGG GATGTTTTAT TAGTTCCAGT AGGTTGGTAA
  GCAGATATTG CCTGCCCAAA CACATTTTAT AAAAAGGAAA CATTGTGTAG TGAAGCGCGG
  AATGCCCAGA GCACATAATA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320342246	CHEV_2_72227008	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254179895					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72219295 () rs orientation: forward

Symbol	Name	Function Class
Map3k20	mitogen-activated protein kinase kinase kinase 20	within coordinates
Rr558965	regulatory region 558965	930 bp proximal
Rr558966	regulatory region 558966	1218 bp proximal
Tssr18338	transcription start site region 18338	1450 bp upstream
Tssr18339	transcription start site region 18339	1768 bp upstream
Tssr18340	transcription start site region 18340	1790 bp upstream
Tssr18341	transcription start site region 18341	1805 bp upstream