rs254182935 SNP Detail

Summary

• ID
  rs254182935
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:70990699 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAACC AGCGAATGCC CTCTCTCCAG
  S
  CCTGCGTCCT GGTCCATCAT GACCT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324417488	CHEV_13_70981458	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254182935					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:70990699 () rs orientation: forward

Symbol	Name	Function Class
Adamts16	ADAM metallopeptidase with thrombospondin type 1 motif 16	769 bp upstream
Cpgi5821	CpG island 5821	740 bp distal
Gm36529	predicted gene, 36529	within coordinates
Rr482301	regulatory region 482301	1920 bp distal
Rr482302	regulatory region 482302	1870 bp distal
Rr482303	regulatory region 482303	837 bp distal
Rr482304	regulatory region 482304	279 bp distal
Tssr123158	transcription start site region 123158	864 bp upstream
Tssr123159	transcription start site region 123159	826 bp upstream
Tssr123160	transcription start site region 123160	797 bp upstream
Tssr123161	transcription start site region 123161	770 bp upstream